org.biojavax.bio.phylo.io.nexus

Class DataBlockBuilder

java.lang.Object

org.biojavax.bio.phylo.io.nexus.NexusBlockBuilder.Abstract

org.biojavax.bio.phylo.io.nexus.CharactersBlockBuilder

org.biojavax.bio.phylo.io.nexus.DataBlockBuilder

All Implemented Interfaces:

CharactersBlockListener, DataBlockListener, NexusBlockBuilder, NexusBlockListener

public class DataBlockBuilder
extends CharactersBlockBuilder
implements DataBlockListener

Builds Nexus characters blocks.

Since:

1.6

Author:

Richard Holland, Tobias Thierer, Jim Balhoff

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojavax.bio.phylo.io.nexus.NexusBlockBuilder

NexusBlockBuilder.Abstract

Constructor Summary

Constructors

Constructor and Description
DataBlockBuilder()

Method Summary

Methods

Modifier and Type	Method and Description
protected CharactersBlock	makeNewBlock()

Methods inherited from class org.biojavax.bio.phylo.io.nexus.CharactersBlockBuilder

addCharLabel, addCharState, addCharStateKeyword, addComment, addEquate, addItem, addMatrixEntry, addState, addStateLabel, addSymbol, addTaxLabel, appendMatrixData, endBlock, endTokenGroup, resetStatus, setCharStateLabel, setDataType, setDimensionsNChar, setDimensionsNTax, setEliminateEnd, setEliminateStart, setGap, setInterleaved, setLabels, setMatchChar, setMissing, setRespectCase, setStatesFormat, setTokens, setTransposed, startBlockObject

Methods inherited from class org.biojavax.bio.phylo.io.nexus.NexusBlockBuilder.Abstract

beginComment, commentText, endComment, getBlockName, getNexusBlock, startBlock

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojavax.bio.phylo.io.nexus.CharactersBlockListener

addCharLabel, addCharState, addCharStateKeyword, addEquate, addItem, addMatrixEntry, addState, addStateLabel, addSymbol, addTaxLabel, appendMatrixData, setCharStateLabel, setDataType, setDimensionsNChar, setDimensionsNTax, setEliminateEnd, setEliminateStart, setGap, setInterleaved, setLabels, setMatchChar, setMissing, setRespectCase, setStatesFormat, setTokens, setTransposed

Methods inherited from interface org.biojavax.bio.phylo.io.nexus.NexusBlockListener

beginComment, commentText, endBlock, endComment, endTokenGroup, startBlock

Constructor Detail

DataBlockBuilder

public DataBlockBuilder()

Method Detail

makeNewBlock

protected CharactersBlock makeNewBlock()

Overrides:

makeNewBlock in class CharactersBlockBuilder