org.biojavax.bio.seq.io

Class EMBLFormat.Terms

java.lang.Object

org.biojavax.bio.seq.RichSequence.Terms

org.biojavax.bio.seq.io.EMBLFormat.Terms

Enclosing class:

EMBLFormat

public static class EMBLFormat.Terms
extends RichSequence.Terms

Implements some EMBL-specific terms.

Field Summary

Fields inherited from class org.biojavax.bio.seq.RichSequence.Terms

DOI_KEY, MEDLINE_KEY, PLASMID_KEY, PUBMED_KEY, SPECIES_KEY, STRAIN_KEY, TISSUE_KEY, TRANSPOSON_KEY

Constructor Summary

Constructors

Constructor and Description
EMBLFormat.Terms()

Method Summary

Methods

Modifier and Type	Method and Description
static ComparableTerm	getDataClassTerm() Getter for the Ensembl-specific 'dataClass' term
static ComparableTerm	getEMBLTerm() Getter for the EMBL term
static ComparableTerm	getGenomicTerm() Getter for the Ensembl-specific 'genomic' term
static ComparableTerm	getRelUpdatedRecordVersionTerm() Getter for the RelUpdatedRecordVersion term
static ComparableTerm	getVersionLineTerm() Getter for the Ensembl-specific 'versionLine' term

Methods inherited from class org.biojavax.bio.seq.RichSequence.Terms

getAdditionalAccessionTerm, getCopyrightTerm, getDateAnnotatedTerm, getDateCreatedTerm, getDateUpdatedTerm, getFeatureDescTerm, getFTIdTerm, getGeneNameTerm, getGeneSynonymTerm, getKeywordTerm, getMolTypeTerm, getOrderedLocusNameTerm, getORFNameTerm, getOrganelleTerm, getPlasmidTerm, getRelAnnotatedTerm, getRelCreatedTerm, getRelUpdatedTerm, getSpeciesTerm, getStrainTerm, getStrandedTerm, getTissueTerm, getTransposonTerm

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EMBLFormat.Terms

public EMBLFormat.Terms()

Method Detail

getRelUpdatedRecordVersionTerm

public static ComparableTerm getRelUpdatedRecordVersionTerm()

Getter for the RelUpdatedRecordVersion term

Returns:

The RelUpdatedRecordVersion Term

getEMBLTerm

public static ComparableTerm getEMBLTerm()

Getter for the EMBL term

Returns:

The EMBL Term

getGenomicTerm

public static ComparableTerm getGenomicTerm()

Getter for the Ensembl-specific 'genomic' term

Returns:

The genomic Term

getVersionLineTerm

public static ComparableTerm getVersionLineTerm()

Getter for the Ensembl-specific 'versionLine' term

Returns:

The version line Term

getDataClassTerm

public static ComparableTerm getDataClassTerm()

Getter for the Ensembl-specific 'dataClass' term

Returns:

The data class Term