Package | Description |
---|---|
org.biojavax |
The Biojava extensions packages, classes that extend the core biojava
functionality
The biojavax packages contain a number of extensions to the core biojava
interfaces.
|
org.biojavax.bio |
Classes to represent biological entities and their relationships.
|
org.biojavax.bio.seq.io |
Classes to support the I/O of RichSequence and
Bioentry objects.
|
Modifier and Type | Class and Description |
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class |
SimpleComment
An implementaion of Comment.
|
Modifier and Type | Method and Description |
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Set<Comment> |
SimpleBioEntry.getComments()
Returns a set of all comments associated with this bioentry.
|
Set<Comment> |
BioEntry.getComments()
Returns a set of all comments associated with this bioentry.
|
Modifier and Type | Method and Description |
---|---|
void |
SimpleBioEntry.addComment(Comment comment)
Adds a comment instance to this bioentry.
|
void |
BioEntry.addComment(Comment comment)
Adds a comment instance to this bioentry.
|
void |
SimpleBioEntry.removeComment(Comment comment)
Removes a comment instance from this bioentry.
|
void |
BioEntry.removeComment(Comment comment)
Removes a comment instance from this bioentry.
|
Modifier and Type | Method and Description |
---|---|
static boolean |
UniProtCommentParser.isParseable(Comment c)
Returns true if the comment may be parseable (starts with -!
|
void |
UniProtCommentParser.parseComment(Comment c)
Parses the comment string from the given comment and populates
the internal fields appropriately.
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