Package | Description |
---|---|
org.biojavax |
The Biojava extensions packages, classes that extend the core biojava
functionality
The biojavax packages contain a number of extensions to the core biojava
interfaces.
|
org.biojavax.bio.db.biosql |
Interface between biojava and biosql databases
|
org.biojavax.bio.seq |
Rich implementations of Sequences, Locations and Features.
|
Modifier and Type | Class and Description |
---|---|
class |
DummyCrossReferenceResolver
A simple implementation of CrossReferenceResolver.
|
Modifier and Type | Method and Description |
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static CrossReferenceResolver |
RichObjectFactory.getDefaultCrossReferenceResolver()
Returns the default cross ref resolver object.
|
Modifier and Type | Method and Description |
---|---|
static void |
RichObjectFactory.setDefaultCrossReferenceResolver(CrossReferenceResolver crr)
Sets the default crossref resolver to use when resolving remote entries.
|
Modifier and Type | Class and Description |
---|---|
class |
BioSQLCrossReferenceResolver
A simple implementation of CrossReferenceResolver
|
Modifier and Type | Method and Description |
---|---|
void |
SimpleRichLocation.setCrossRefResolver(CrossReferenceResolver r)
Sets the cross ref resolver to use when retrieving remote symbols.
|
void |
RichLocation.setCrossRefResolver(CrossReferenceResolver r)
Sets the cross ref resolver to use when retrieving remote symbols.
|
void |
EmptyRichLocation.setCrossRefResolver(CrossReferenceResolver r)
Sets the cross ref resolver to use when retrieving remote symbols.
|
void |
CompoundRichLocation.setCrossRefResolver(CrossReferenceResolver r)
Sets the cross ref resolver to use when retrieving remote symbols.
|
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