Uses of Interface
org.biojavax.Note

Packages that use Note

Package	Description
org.biojavax	The Biojava extensions packages, classes that extend the core biojava functionality The biojavax packages contain a number of extensions to the core biojava interfaces.
org.biojavax.bio	Classes to represent biological entities and their relationships.
org.biojavax.bio.db.biosql	Interface between biojava and biosql databases

Uses of Note in org.biojavax

Classes in org.biojavax that implement Note

Modifier and Type	Class and Description
class	SimpleNote Simple implementation of Note.

Methods in org.biojavax that return Note

Modifier and Type	Method and Description
Note	SimpleRichAnnotation.getNote(Note note) Uses the term and rank to lookup a note in this annotation.
Note	RichAnnotation.getNote(Note note) Uses the term and rank to lookup a note in this annotation.
Note	EmptyRichAnnotation.getNote(Note note) Uses the term and rank to lookup a note in this annotation.
Note[]	SimpleRichAnnotation.getProperties(Object key) Deprecated.
Note[]	RichAnnotation.getProperties(Object key) Find all the Notes with any rank that match the key.
Note[]	EmptyRichAnnotation.getProperties(Object key) Find all the Notes with any rank that match the key.

Methods in org.biojavax that return types with arguments of type Note

Modifier and Type	Method and Description
Set<Note>	SimpleRichAnnotation.getNoteSet() Returns an immutable set of all notes in this annotation.
Set<Note>	RichAnnotation.getNoteSet() Returns an immutable set of all notes in this annotation.
Set<Note>	RichAnnotatable.getNoteSet() Returns the set of notes associated with this object.

Methods in org.biojavax with parameters of type Note

Modifier and Type	Method and Description
void	SimpleRichAnnotation.addNote(Note note) Adds a note to this annotation.
void	RichAnnotation.addNote(Note note) Adds a note to this annotation.
void	EmptyRichAnnotation.addNote(Note note) Adds a note to this annotation.
boolean	SimpleRichAnnotation.contains(Note note) Returns true if the given note exists in this annotation.
boolean	RichAnnotation.contains(Note note) Returns true if the given note exists in this annotation.
boolean	EmptyRichAnnotation.contains(Note note) Returns true if the given note exists in this annotation.
Note	SimpleRichAnnotation.getNote(Note note) Uses the term and rank to lookup a note in this annotation.
Note	RichAnnotation.getNote(Note note) Uses the term and rank to lookup a note in this annotation.
Note	EmptyRichAnnotation.getNote(Note note) Uses the term and rank to lookup a note in this annotation.
void	SimpleRichAnnotation.removeNote(Note note) Removes a note from this annotation.
void	RichAnnotation.removeNote(Note note) Removes a note from this annotation.
void	EmptyRichAnnotation.removeNote(Note note) Removes a note from this annotation.

Method parameters in org.biojavax with type arguments of type Note

Modifier and Type	Method and Description
void	SimpleRichAnnotation.setNoteSet(Set<Note> notes) Clears the notes from this annotation and replaces them with those from the given set.
void	RichAnnotation.setNoteSet(Set<Note> notes) Clears the notes from this annotation and replaces them with those from the given set.
void	RichAnnotatable.setNoteSet(Set<Note> notes) Clears the notes associated with this object and replaces them with the contents of this set.

Uses of Note in org.biojavax.bio

Methods in org.biojavax.bio that return types with arguments of type Note

Modifier and Type	Method and Description
Set<Note>	SimpleBioEntry.getNoteSet() Returns the set of notes associated with this object.

Method parameters in org.biojavax.bio with type arguments of type Note

Modifier and Type	Method and Description
void	SimpleBioEntry.setNoteSet(Set<Note> notes) Clears the notes associated with this object and replaces them with the contents of this set.

Uses of Note in org.biojavax.bio.db.biosql

Methods in org.biojavax.bio.db.biosql that return Note

Modifier and Type	Method and Description
Note	BioSQLFeatureFilter.ByNote.getNote()

Constructors in org.biojavax.bio.db.biosql with parameters of type Note

Constructor and Description
BioSQLFeatureFilter.ByNote(Note note)