Uses of Interface
org.biojavax.ga.GeneticAlgorithm

Packages that use GeneticAlgorithm

Package	Description
org.biojavax.ga	Classes to provide a genetic algorithm framework
org.biojavax.ga.functions	GA functions A genetic algorithm requires a number of functions.
org.biojavax.ga.impl	Default implementations and abstract classes.

Uses of GeneticAlgorithm in org.biojavax.ga

Methods in org.biojavax.ga with parameters of type GeneticAlgorithm

Modifier and Type	Method and Description
boolean	GAStoppingCriteria.stop(GeneticAlgorithm ga) Determines if an Algorithm should stop spawning new generations
boolean	GAStoppingCriteria.MaximumGeneration.stop(GeneticAlgorithm ga) Stops the Algorithm if the iterations are >= maxGenerations

Uses of GeneticAlgorithm in org.biojavax.ga.functions

Methods in org.biojavax.ga.functions with parameters of type GeneticAlgorithm

Modifier and Type	Method and Description
double[]	FitnessFunction.fitness(Organism org, Population pop, GeneticAlgorithm genAlg) Calculates the fitness of org.
Population	TournamentSelection.select(Population pop, GeneticAlgorithm genAlg) Standard call to select organisms, will select a number of Organisms corresponding to 75 % of the population.
Population	SelectionFunction.select(Population pop, GeneticAlgorithm genAlg) Selects a Population of Organisms for replication based on their fitness.
Population	SelectionFunction.Threshold.select(Population pop, GeneticAlgorithm genAlg) Selects individuals whose fitness (as determined by the FitnessFunction) is more than the cutoff.
Population	SelectionFunction.SelectAll.select(Population pop, GeneticAlgorithm genAlg)
Population	ProportionalSelection.select(Population pop, GeneticAlgorithm genAlg)
Population	TournamentSelection.selectNIndividuals(Population pop, GeneticAlgorithm ga, int n) This method selects n Organism from the population it is given, using the tournament selection method

Uses of GeneticAlgorithm in org.biojavax.ga.impl

Classes in org.biojavax.ga.impl that implement GeneticAlgorithm

Modifier and Type	Class and Description
class	AbstractGeneticAlgorithm Base class from which most implementations of GeneticAlgorithm will inherit.
class	SimpleGeneticAlgorithm A simple implementation of the GeneticAlgorithm interface it is not intended that this class be overidden, hence it is final.