org.biojavax.ga.impl

Class SimpleOrganism

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojavax.ga.impl.AbstractOrganism

org.biojavax.ga.impl.SimpleOrganism

All Implemented Interfaces:

Changeable, Organism

public class SimpleOrganism
extends AbstractOrganism

A Simple Haploid Organism implementation

Since:

1.5

Version:

1.0

Author:

Mark Schreiber

Field Summary

Fields inherited from class org.biojavax.ga.impl.AbstractOrganism

chromosomes

Fields inherited from interface org.biojavax.ga.Organism

CHROMOSOMES, NAME

Constructor Summary

Constructors

Constructor and Description
SimpleOrganism()
SimpleOrganism(Organism org, String name)
SimpleOrganism(String name)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	isHaploid() Simple Organisms are Halpoid
Organism	replicate(String name) Creates a replica of this Organism with a new name.
protected void	setChromImpl(SymbolList[] chromosomes)

Methods inherited from class org.biojavax.ga.impl.AbstractOrganism

getChromosomes, getFitness, getName, setChromosomes, setFitness, setName

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Constructor Detail

SimpleOrganism

public SimpleOrganism()

SimpleOrganism

public SimpleOrganism(String name)

SimpleOrganism

public SimpleOrganism(Organism org,
              String name)

Method Detail

setChromImpl

protected void setChromImpl(SymbolList[] chromosomes)

Specified by:

setChromImpl in class AbstractOrganism

isHaploid

public boolean isHaploid()

Simple Organisms are Halpoid

Specified by:

isHaploid in interface Organism

Specified by:

isHaploid in class AbstractOrganism

Returns:

true

replicate

public Organism replicate(String name)

Description copied from interface: Organism

Creates a replica of this Organism with a new name.

Parameters:

name - the new name for the sequence.

Returns:

the replicated organism.