Uses of Package
org.biojava.bio.dp.twohead

Packages that use org.biojava.bio.dp.twohead

Package	Description
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.
org.biojava.bio.dp.twohead

Classes in org.biojava.bio.dp.twohead used by org.biojava.bio.dp

Class and Description
CellCalculatorFactoryMaker The interface for all functions that can calculate the 'scores' array for a given cell.

Classes in org.biojava.bio.dp.twohead used by org.biojava.bio.dp.twohead

Class and Description
AbstractMatrixPairDPCursor
Cell A single cell in the DP matrix.
CellCalculator The interface for all functions that can calculate the 'scores' array for a given cell.
CellCalculatorFactory
CellCalculatorFactoryMaker The interface for all functions that can calculate the 'scores' array for a given cell.
EmissionCache Cache for columns of emission probabilities in pair-wise alignment algorithms.
PairDPCursor A cursor over a DP matrix.
PairDPMatrix Storage structure for intermediate values from a pairwise dynamic programming run.