| Package | Description |
|---|---|
| org.biojava.bio.program.blast2html |
Code for generating HTML reports from blast output
|
| Class and Description |
|---|
| AbstractAlignmentStyler
Abstract implementation of
AlignmentStyler, contains
utility methods for generating a set of HTML styles from a list of
RGB colours. |
| AlignmentMarker
Class to do simple HTML colouring of sequence alignments.
|
| ColourCommand
Interface for specifying whether a particular pair
of residues/bases should be coloured.
|
| DatabaseURLGenerator
Takes a database ID and some configuration properties
( such as base URL ) and returns either a URL or
a full anchor tag.
|
| HTMLRenderer
Renders HTML version of blast-like output.
|
| URLGeneratorFactory
Interface for a factory method to return a list of
0, 1 or more
DatabaseURLGenerator instances. |
Copyright © 2020 BioJava. All rights reserved.