Package | Description |
---|---|
org.biojava.bio.program.ssaha |
SSAHA sequence searching API.
|
Modifier and Type | Class and Description |
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class |
HitMerger
A listener that merges overlapping hits and culls all hits under a given
length.
|
static class |
SearchListener.Echo
A SearchListener that prints events out to a PrintStream.
|
static class |
SearchListener.FilterByLength
A simple listener that filters out all hits that are too short.
|
static class |
SearchListener.Tee
A SearchListener that passes events on to two delegate listeners.
|
static class |
SearchListener.Wrapper
A simple wrapper implementation.
|
Modifier and Type | Method and Description |
---|---|
void |
CompactedDataStore.fireHits(int word,
int offset,
SearchListener listener) |
void |
DataStore.search(String id,
SymbolList symList,
SearchListener listener)
Search the DataStore with a symbol list.
|
void |
CompactedDataStore.search(String seqID,
SymbolList symList,
SearchListener listener) |
Constructor and Description |
---|
FilterByLength(SearchListener delegate,
int minLength) |
HitMerger(SearchListener delegate,
int minLength)
Build a new HitMerger that will pass events on to a delegate.
|
Tee(SearchListener d1,
SearchListener d2) |
Wrapper(SearchListener delegate) |
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