Package | Description |
---|---|
org.biojava.bio.annodb |
Databases of generic structured data (annotation) objects.
|
org.biojava.bio.program.formats |
Experimental parsers using the tagvalue framework.
|
org.biojava.bio.program.tagvalue |
Process files as streams of records, each with tags with values.
|
org.biojava.bio.program.unigene |
Objects for representing Unigene clusters.
|
Modifier and Type | Method and Description |
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ParserListener |
IndexedAnnotationDB.ParserListenerFactory.getParserListener(TagValueListener listener)
Get the ParserListener for a TagValueListener.
|
ParserListener |
IndexedAnnotationDB.StaticMethodRPFactory.getParserListener(TagValueListener tvl) |
Modifier and Type | Method and Description |
---|---|
ParserListener |
Enzyme.getParserListener(TagValueListener listener) |
ParserListener |
Ligand.Enzyme.getParserListener(TagValueListener listener) |
ParserListener |
Ligand.Reaction.getParserListener(TagValueListener listener) |
ParserListener |
Ligand.Compound.getParserListener(TagValueListener listener) |
ParserListener |
Swissprot.getParserListener(TagValueListener listener) |
ParserListener |
Embl.getParserListener(TagValueListener listener) |
ParserListener |
Format.getParserListener(TagValueListener listener)
Retrieve a ParserListener pair for the format that will pass all events
on to a listener.
|
Modifier and Type | Method and Description |
---|---|
static ParserListener |
Formats.createEmblParserListener(TagValueListener listener) |
static ParserListener |
Formats.createSwissprotParserListener(TagValueListener listener) |
Modifier and Type | Method and Description |
---|---|
static ParserListener |
UnigeneTools.buildDataParser(TagValueListener listener)
Generate a tag-value parser for unigene data files that will pass all
parsing events on to your listener.
|
static ParserListener |
UnigeneTools.buildLibInfoParser(TagValueListener listener)
Generate a tag-value parser for the library info unigene files.
|
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