org.biojava.bio.seq

Interfaces

• ComponentFeature
• Feature
• FeatureFilter
• FeatureHolder
• FeatureRealizer
• FeatureTypes.Repository
• FeatureTypes.Type
• FilterUtils.FilterTransformer
• Frame
• FramedFeature
• GappedSequence
• OptimizableFilter
• RealizingFeatureHolder
• RemoteFeature
• RemoteFeature.Resolver
• Sequence
• SequenceAnnotator
• SequenceFactory
• SequenceIterator
• StrandedFeature

Classes

• AbstractFeatureHolder
• ByLocationMinMaxComparator
• ByLocationMinMaxFeatureComparator
• CircularView
• ComponentFeature.Template
• DNATools
• Feature.ByLocationComparator
• Feature.Template
• FeatureFilter.And
• FeatureFilter.AnnotationContains
• FeatureFilter.ByAncestor
• FeatureFilter.ByAnnotation
• FeatureFilter.ByAnnotationType
• FeatureFilter.ByChild
• FeatureFilter.ByClass
• FeatureFilter.ByComponentName
• FeatureFilter.ByDescendant
• FeatureFilter.ByFeature
• FeatureFilter.ByPairwiseScore
• FeatureFilter.ByParent
• FeatureFilter.BySequenceName
• FeatureFilter.BySource
• FeatureFilter.ByType
• FeatureFilter.ContainedByLocation
• FeatureFilter.FrameFilter
• FeatureFilter.HasAnnotation
• FeatureFilter.Not
• FeatureFilter.OnlyChildren
• FeatureFilter.OnlyDescendants
• FeatureFilter.Or
• FeatureFilter.OverlapsLocation
• FeatureFilter.ShadowContainedByLocation
• FeatureFilter.ShadowOverlapsLocation
• FeatureFilter.StrandFilter
• FeatureHolder.EmptyFeatureHolder
• FeatureHolderUtils
• FeatureTypes
• FeatureTypes.RepositoryImpl
• FilterUtils
• FramedFeature.ReadingFrame
• FramedFeature.Template
• GeneticCodes
• LazyFeatureHolder
• MergeFeatureHolder
• NewSimpleAssembly
• NucleotideTools
• ProteinTools
• RemoteFeature.Region
• RemoteFeature.Template
• RNATools
• SequenceTools
• SimpleAssembly
• SimpleFeatureHolder
• SimpleFeatureRealizer
• StrandedFeature.Strand
• StrandedFeature.Template
• StrandParser