org.biojava.bio.seq

Class FeatureFilter.ByAnnotation

java.lang.Object

org.biojava.bio.seq.FeatureFilter.ByAnnotationType

org.biojava.bio.seq.FeatureFilter.ByAnnotation

All Implemented Interfaces:

Serializable, FeatureFilter, OptimizableFilter

Enclosing interface:

FeatureFilter

public static final class FeatureFilter.ByAnnotation
extends FeatureFilter.ByAnnotationType

Retrieve features that contain a given annotation with a given value.

Since:

1.1

Author:

Matthew Pocock, Keith James

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter

FeatureFilter.And, FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySequenceName, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.Not, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.Or, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter

Field Summary

Fields inherited from interface org.biojava.bio.seq.FeatureFilter

all, leaf, none, top_level

Constructor Summary

Constructors

Constructor and Description
ByAnnotation(Object key, Object value) Make a new ByAnnotation that will accept features with an annotation bundle containing 'value' associated with 'key'.

Method Summary

Modifier and Type	Method and Description
Object	getKey()
Object	getValue()

Methods inherited from class org.biojava.bio.seq.FeatureFilter.ByAnnotationType

accept, equals, getType, hashCode, isDisjoint, isProperSubset, setType, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

ByAnnotation

public ByAnnotation(Object key,
                    Object value)

Make a new ByAnnotation that will accept features with an annotation bundle containing 'value' associated with 'key'.

Parameters:

key - the Object used as a key in the annotation

value - the Object associated with key in the annotation

Method Detail

getKey

public Object getKey()

getValue

public Object getValue()