org.biojavax.ga

Interface Population

All Superinterfaces:

Changeable

All Known Implementing Classes:

AbstractPopulation, SimplePopulation

public interface Population
extends Changeable

A collection of GA organisms

Since:

1.5

Version:

1.0

Author:

Mark Schreiber

Field Summary

Fields

Modifier and Type	Field and Description
static ChangeType	NAME
static ChangeType	ORGANISMS

Method Summary

Modifier and Type	Method and Description
void	addOrganism(Organism org) Adds an Organism to the Population
void	addOrganisms(Organism[] orgs) Adds several organisms to the population
void	addOrganisms(Population orgs) Adds the residents of one population to this one
void	addOrganisms(Set orgs) Adds several organisms to the population
String	getName()
Organism	getOrganismByName(String name) Gets the specified organism
Set	getOrganisms() Gets the Set of Organisms
Iterator	organisms()
void	removeAllOrganisms() Removes all the Organisms in this Population
void	removeOrganism(Organism org) Kills off the organism
void	removeOrganisms(Organism[] orgs) Removes all the Organisms in orgs
void	removeOrganisms(Set orgs) Removes all the Organisms in orgs
void	setName(String name) Sets the name of the population
int	size() Gets the Size of the population

Methods inherited from interface org.biojava.utils.Changeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Field Detail

ORGANISMS

static final ChangeType ORGANISMS

NAME

static final ChangeType NAME

Method Detail

getName

String getName()

Returns:

the name of the population

setName

void setName(String name)
      throws ChangeVetoException

Sets the name of the population

Parameters:

name - set the name to this.

Throws:

ChangeVetoException - if the name may not be changed

addOrganism

void addOrganism(Organism org)
          throws ChangeVetoException,
                 IllegalOrganismException

Adds an Organism to the Population

Parameters:

org - the organism

Throws:

ChangeVetoException

IllegalOrganismException - if for some reason the organism is invalid

addOrganisms

void addOrganisms(Organism[] orgs)
           throws ChangeVetoException,
                  IllegalOrganismException

Adds several organisms to the population

Parameters:

orgs - the organisms to add

Throws:

ChangeVetoException

IllegalOrganismException - if for some reason the organism is invalid

addOrganisms

void addOrganisms(Set orgs)
           throws ChangeVetoException,
                  IllegalOrganismException

Adds several organisms to the population

Parameters:

orgs - the organisms to add

Throws:

ChangeVetoException

IllegalOrganismException - if for some reason the organism is invalid

addOrganisms

void addOrganisms(Population orgs)
           throws ChangeVetoException,
                  IllegalOrganismException

Adds the residents of one population to this one

Parameters:

orgs - the population to add

Throws:

ChangeVetoException

IllegalOrganismException - if for some reason the organism is invalid

removeOrganism

void removeOrganism(Organism org)
             throws ChangeVetoException

Kills off the organism

Parameters:

org - the organism to kill

Throws:

ChangeVetoException

removeOrganisms

void removeOrganisms(Organism[] orgs)
              throws ChangeVetoException

Removes all the Organisms in orgs

Parameters:

orgs - the Organisms to remove.

Throws:

ChangeVetoException - if the change is vetoed

removeOrganisms

void removeOrganisms(Set orgs)
              throws ChangeVetoException

Removes all the Organisms in orgs

Parameters:

orgs - the Organisms to remove.

Throws:

ChangeVetoException - if the change is vetoed

removeAllOrganisms

void removeAllOrganisms()
                 throws ChangeVetoException

Removes all the Organisms in this Population

Throws:

ChangeVetoException - if the change is vetoed

getOrganismByName

Organism getOrganismByName(String name)

Gets the specified organism

Parameters:

name - the name of the organism to retreive

Returns:

the organism named or null if that organism doesn't exist.

getOrganisms

Set getOrganisms()

Gets the Set of Organisms

Returns:

a Set

organisms

Iterator organisms()

Returns:

an iterator over the set of Organisms.

size

int size()

Gets the Size of the population

Returns:

the size