| Package | Description | 
|---|---|
| org.biojava.bio.dp | 
 HMM and Dynamic Programming Algorithms. 
 | 
| Modifier and Type | Class and Description | 
|---|---|
class  | 
SimpleDotState
A Dot state that you can make and use. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
DotState | 
ProfileHMM.getDelete(int indx)
Retrieves the delete state for column indx. 
 | 
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