| Package | Description | 
|---|---|
| org.biojava.bio.dp | 
 HMM and Dynamic Programming Algorithms. 
 | 
| org.biojava.bio.program.hmmer | 
 
Tools for working with profile Hidden Markov Models from the HMMer package. 
 | 
| Modifier and Type | Class and Description | 
|---|---|
class  | 
SimpleModelInState  | 
| Modifier and Type | Method and Description | 
|---|---|
ModelInState | 
FullHmmerProfileHMM.hmm()
Gets the inner HmmerProfileHMM state 
 | 
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