Uses of Interface
org.biojava.bio.dp.TrainingAlgorithm

Packages that use TrainingAlgorithm

Package	Description
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.

Uses of TrainingAlgorithm in org.biojava.bio.dp

Classes in org.biojava.bio.dp that implement TrainingAlgorithm

Modifier and Type	Class and Description
class	AbstractTrainer An abstract implementation of TrainingAlgorithm that provides a framework for plugging in per-cycle code for parameter optimization.
class	BaumWelchSampler Train a hidden markov model using a sampling algorithm.
class	BaumWelchTrainer Train a hidden markov model using maximum likelihood.

Methods in org.biojava.bio.dp with parameters of type TrainingAlgorithm

Modifier and Type	Method and Description
boolean	StoppingCriteria.isTrainingComplete(TrainingAlgorithm ta) Decide if the training has completed.