Package org.biojava.bio.dp.onehead

Interface Summary

Interface	Description
DPCursor	Encapsulates the dynamic programmming matrix, and the context within algorithms work.

Class Summary

Class	Description
SingleDP	An implementation of DP that aligns a single sequence against a single model.
SingleDPMatrix	The dynamic programming matrix for a single sequence.
SmallCursor	Constant-memory implementation of single-head DP cursor.