| Package | Description |
|---|---|
| org.biojava.bio.dp |
HMM and Dynamic Programming Algorithms.
|
| org.biojava.bio.dp.twohead |
| Constructor and Description |
|---|
DefaultFactory(CellCalculatorFactoryMaker cfFacM) |
| Modifier and Type | Class and Description |
|---|---|
class |
DPCompiler
This is an implementation of CellCalculatorFactoryMaker that compiles the
HMM object down to Java byte-code that is equivalent in behaviour to the
interpreter.
|
static class |
DPInterpreter.Maker |
| Constructor and Description |
|---|
PairwiseDP(MarkovModel mm,
CellCalculatorFactoryMaker ccfm) |
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