| Package | Description | 
|---|---|
| org.biojava.bio.program.blast2html | 
 Code for generating HTML reports from blast output 
 | 
| Class and Description | 
|---|
| AbstractAlignmentStyler
 
 Abstract implementation of  
AlignmentStyler, contains
 utility methods for generating a set of HTML styles from a list of
 RGB colours. | 
| AlignmentMarker
 
 Class to do simple HTML colouring of sequence alignments. 
 | 
| ColourCommand
 
 Interface for specifying whether a particular pair
 of residues/bases should be coloured. 
 | 
| DatabaseURLGenerator
 Takes a database ID and some configuration properties
 ( such as base URL ) and returns either a URL or 
 a full anchor tag. 
 | 
| HTMLRenderer
 Renders HTML version of blast-like output. 
 | 
| URLGeneratorFactory
 Interface for a factory method to return a list of
 0, 1 or more  
DatabaseURLGenerator instances. | 
Copyright © 2020 BioJava. All rights reserved.