org.biojava.bio.program.homologene

Class SimpleOrthologueSet

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojava.bio.program.homologene.AbstractOrthologueSet

org.biojava.bio.program.homologene.SimpleOrthologueSet

All Implemented Interfaces:

OrthologueSet, Changeable

public class SimpleOrthologueSet
extends AbstractOrthologueSet

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	SimpleOrthologueSet.Iterator

Field Summary

Fields inherited from interface org.biojava.bio.program.homologene.OrthologueSet

MODIFY

Constructor Summary

Constructors

Constructor and Description
SimpleOrthologueSet()

Method Summary

Modifier and Type	Method and Description
void	addOrthologue(Orthologue ortho) Add an orthologue to the set.
Orthologue	getOrthologue(String homologeneID)
OrthologueSet.Iterator	iterator() Return an iterator to the contents of the set.
void	removeOrthologue(Orthologue ortho) Remove an orthologue from the set.

Methods inherited from class org.biojava.bio.program.homologene.AbstractOrthologueSet

filter

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleOrthologueSet

public SimpleOrthologueSet()

Method Detail

addOrthologue

public void addOrthologue(Orthologue ortho)
                   throws ChangeVetoException

Description copied from interface: OrthologueSet

Add an orthologue to the set.

Throws:

ChangeVetoException

removeOrthologue

public void removeOrthologue(Orthologue ortho)
                      throws ChangeVetoException

Description copied from interface: OrthologueSet

Remove an orthologue from the set.

Throws:

ChangeVetoException

getOrthologue

public Orthologue getOrthologue(String homologeneID)

iterator

public OrthologueSet.Iterator iterator()

Description copied from interface: OrthologueSet

Return an iterator to the contents of the set.