Package org.biojava.bio.program.sax

Parsers which offer XML representations of the output from common bioinformatics tools.

See: Description

Class Summary

Class	Description
BlastLikeSAXParser	A facade class allowing for direct SAX2-like parsing of the native output from Blast-like bioinformatics software.
ClustalWAlignmentSAXParser	A SAX2 parser for dealing with a multiple sequence alignment as produced by ClustalW outputing .aln format.
FastaSearchSAXParser	FastaSearchSAXParser is a SAX2 compliant parser for '-m 10' format output from the the Fasta search program (see the Fasta documentation for details of this format).
FastaSequenceSAXParser	A SAX2 parser for dealing with multiple sequences in FASTA format.
PdbSAXParser	A SAX2 parser for dealing with native PDB files.
SequenceAlignmentSAXParser	A SAX2 parser for dealing with a sequence alignments.

Package org.biojava.bio.program.sax Description

Parsers which offer XML representations of the output from common bioinformatics tools.