org.biojava.bio.program.ssaha

Class SequenceStreamer.FileStreamer

java.lang.Object

org.biojava.bio.program.ssaha.SequenceStreamer.FileStreamer

All Implemented Interfaces:

SequenceStreamer

Enclosing interface:

SequenceStreamer

public static class SequenceStreamer.FileStreamer
extends Object
implements SequenceStreamer

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.program.ssaha.SequenceStreamer

SequenceStreamer.FileStreamer, SequenceStreamer.SequenceDBStreamer

Constructor Summary

Constructors

Constructor and Description
FileStreamer(SequenceFormat format, SymbolTokenization toke, File f)
FileStreamer(SequenceFormat format, SymbolTokenization toke, List files)

Method Summary

Modifier and Type	Method and Description
boolean	hasNext()
void	reset()
void	streamNext(SeqIOListener listener)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FileStreamer

public FileStreamer(SequenceFormat format,
                    SymbolTokenization toke,
                    List files)

FileStreamer

public FileStreamer(SequenceFormat format,
                    SymbolTokenization toke,
                    File f)

Method Detail

reset

public void reset()

Specified by:

reset in interface SequenceStreamer

hasNext

public boolean hasNext()

Specified by:

hasNext in interface SequenceStreamer

streamNext

public void streamNext(SeqIOListener listener)
                throws BioException,
                       IOException

Specified by:

streamNext in interface SequenceStreamer

Throws:

BioException

IOException