org.biojava.bio.program.ssbind

Class SeqSimilarityStAXHandler

java.lang.Object

org.biojava.utils.stax.StAXContentHandlerBase

org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

All Implemented Interfaces:

StAXContentHandler

Direct Known Subclasses:

AlignmentStAXHandler, HeaderStAXHandler, HitStAXHandler, HSPStAXHandler, HSPSummaryStAXHandler

public class SeqSimilarityStAXHandler
extends StAXContentHandlerBase

SeqSimilarityStAXHandler is a base class for creating modular StAX handlers which send callbacks to a SeqSimilarityStAXAdapter.

Since:

1.3

Author:

Keith James

Field Summary

Fields

Modifier and Type	Field and Description
protected SeqSimilarityStAXAdapter	ssContext

Constructor Summary

Constructors

Constructor and Description
SeqSimilarityStAXHandler(SeqSimilarityStAXAdapter ssContext) Creates a new SeqSimilarityStAXHandler which simply maintains a list of StAXHandlerBindings and delegates to any suitable StAXContentHandler bound by one of them.

Method Summary

Modifier and Type	Method and Description
protected void	addHandler(ElementRecognizer recognizer, StAXHandlerFactory factory)
void	endElement(String nsURI, String localName, String qName, StAXContentHandler handler)
protected void	handleEndElement(String nsURI, String localName, String qName)
protected void	handleStartElement(String nsURI, String localName, String qName, Attributes attrs)
void	startElement(String nsURI, String localName, String qName, Attributes attrs, DelegationManager dm)

Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ssContext

protected SeqSimilarityStAXAdapter ssContext

Constructor Detail

SeqSimilarityStAXHandler

public SeqSimilarityStAXHandler(SeqSimilarityStAXAdapter ssContext)

Creates a new SeqSimilarityStAXHandler which simply maintains a list of StAXHandlerBindings and delegates to any suitable StAXContentHandler bound by one of them.

Method Detail

startElement

public void startElement(String nsURI,
                         String localName,
                         String qName,
                         Attributes attrs,
                         DelegationManager dm)
                  throws SAXException

Specified by:

startElement in interface StAXContentHandler

Overrides:

startElement in class StAXContentHandlerBase

Throws:

SAXException

endElement

public void endElement(String nsURI,
                       String localName,
                       String qName,
                       StAXContentHandler handler)
                throws SAXException

Specified by:

endElement in interface StAXContentHandler

Overrides:

endElement in class StAXContentHandlerBase

Throws:

SAXException

addHandler

protected void addHandler(ElementRecognizer recognizer,
                          StAXHandlerFactory factory)

handleStartElement

protected void handleStartElement(String nsURI,
                                  String localName,
                                  String qName,
                                  Attributes attrs)
                           throws SAXException

Throws:

SAXException

handleEndElement

protected void handleEndElement(String nsURI,
                                String localName,
                                String qName)
                         throws SAXException

Throws:

SAXException