Uses of Interface
org.biojava.bio.search.SeqSimilaritySearchResult

Packages that use SeqSimilaritySearchResult

Package	Description
org.biojava.bio.program.ssbind	Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
org.biojava.bio.search	Interfaces and classes for representing sequence similarity search results.

Uses of SeqSimilaritySearchResult in org.biojava.bio.program.ssbind

Methods in org.biojava.bio.program.ssbind that return SeqSimilaritySearchResult

Modifier and Type	Method and Description
SeqSimilaritySearchResult	BlastLikeSearchBuilder.makeSearchResult()

Uses of SeqSimilaritySearchResult in org.biojava.bio.search

Classes in org.biojava.bio.search that implement SeqSimilaritySearchResult

Modifier and Type	Class and Description
class	SequenceDBSearchResult Deprecated. SimpleSeqSimilaritySearchResult has been made Annotatable and is now functionally identical.
class	SimpleSeqSimilaritySearchResult SimpleSeqSimilaritySearchResult objects represent a result of a search of a SymbolList against the sequences within a SequenceDB object.

Methods in org.biojava.bio.search that return SeqSimilaritySearchResult

Modifier and Type	Method and Description
SeqSimilaritySearchResult	SearchBuilder.makeSearchResult() The makeSearchResult method returns a SeqSimilaritySearchResult instance created from accumulated data.
SeqSimilaritySearchResult	SeqSimilaritySearcher.search(SymbolList querySeq, SequenceDB db, Map searchParameters) Using this sequence similarity searcher, search with the given sequence against the given sequence database.