Uses of Interface
org.biojava.bio.seq.RealizingFeatureHolder

Packages that use RealizingFeatureHolder

Package	Description
org.biojava.bio.program.phred	Parser for Phred output
org.biojava.bio.seq	Classes and interfaces for defining biological sequences and informatics objects.
org.biojava.bio.seq.impl	Standard in-memory implementations of Sequence and Feature.

Uses of RealizingFeatureHolder in org.biojava.bio.program.phred

Classes in org.biojava.bio.program.phred that implement RealizingFeatureHolder

Modifier and Type	Class and Description
class	PhredSequence PhredSequence is an extension of SimpleSequence that implements Qualitative to hold Phred quality scores.

Uses of RealizingFeatureHolder in org.biojava.bio.seq

Classes in org.biojava.bio.seq that implement RealizingFeatureHolder

Modifier and Type	Class and Description
class	CircularView A circular view onto another Sequence object.
class	NewSimpleAssembly A Sequence which is assembled from other sequences contained in a set of ComponentFeature objects.
class	SimpleAssembly A Sequence which is assembled from other sequences contained in a set of ComponentFeature objects.

Uses of RealizingFeatureHolder in org.biojava.bio.seq.impl

Classes in org.biojava.bio.seq.impl that implement RealizingFeatureHolder

Modifier and Type	Class and Description
class	RevCompSequence A reverse complement view onto Sequence interface.
class	SimpleFeature A no-frills implementation of a feature.
class	SimpleFramedFeature Title: SimpleFramedFeature.
class	SimpleHomologyFeature
class	SimpleRemoteFeature A no-frills implementation of a remote feature.
class	SimpleRestrictionSite SimpleRestrictionSite represents the recognition site of a restriction enzyme.
class	SimpleSequence A basic implementation of the Sequence interface.
class	SimpleSimilarityPairFeature SimpleSimilarityPairFeature represents a similarity between a query sequence and a subject sequence as produced by a search program.
class	SimpleStrandedFeature A no-frills implementation of StrandedFeature.
class	ViewSequence A view onto another Sequence object.