Uses of Interface
org.biojava.bio.seq.StrandedFeature

Packages that use StrandedFeature

Package	Description
org.biojava.bio.molbio	The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR.
org.biojava.bio.seq	Classes and interfaces for defining biological sequences and informatics objects.
org.biojava.bio.seq.homol	The classes and interfaces for defining sequence similarity and honology.
org.biojava.bio.seq.impl	Standard in-memory implementations of Sequence and Feature.
org.biojavax.bio.seq	Rich implementations of Sequences, Locations and Features.

Uses of StrandedFeature in org.biojava.bio.molbio

Subinterfaces of StrandedFeature in org.biojava.bio.molbio

Modifier and Type	Interface and Description
interface	RestrictionSite RestrictionSite represents the recognition site of a restriction enzyme.

Uses of StrandedFeature in org.biojava.bio.seq

Subinterfaces of StrandedFeature in org.biojava.bio.seq

Modifier and Type	Interface and Description
interface	ComponentFeature Feature which represents a component in an assembly (contig).
interface	FramedFeature Title: FramedFeature.
interface	RemoteFeature A feature that indicates that there is some remote feature that can't be represented entirely on a single Sequence.

Uses of StrandedFeature in org.biojava.bio.seq.homol

Subinterfaces of StrandedFeature in org.biojava.bio.seq.homol

Modifier and Type	Interface and Description
interface	HomologyFeature
interface	SimilarityPairFeature SimilarityPairFeature describes a pairwise similarity between two nucleotide sequences (as it extends StrandedFeature).

Uses of StrandedFeature in org.biojava.bio.seq.impl

Classes in org.biojava.bio.seq.impl that implement StrandedFeature

Modifier and Type	Class and Description
class	SimpleFramedFeature Title: SimpleFramedFeature.
class	SimpleHomologyFeature
class	SimpleRemoteFeature A no-frills implementation of a remote feature.
class	SimpleRestrictionSite SimpleRestrictionSite represents the recognition site of a restriction enzyme.
class	SimpleSimilarityPairFeature SimpleSimilarityPairFeature represents a similarity between a query sequence and a subject sequence as produced by a search program.
class	SimpleStrandedFeature A no-frills implementation of StrandedFeature.

Uses of StrandedFeature in org.biojavax.bio.seq

Subinterfaces of StrandedFeature in org.biojavax.bio.seq

Modifier and Type	Interface and Description
interface	RichFeature Represents a feature that can be given name and rank and be moved from one sequence to another.

Classes in org.biojavax.bio.seq that implement StrandedFeature

Modifier and Type	Class and Description
class	SimpleRichFeature A simple implementation of RichFeature.