Uses of Interface
org.biojava.bio.seq.db.SequenceDBInstallation

Packages that use SequenceDBInstallation

Package	Description
org.biojava.bio.program.ssbind	Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
org.biojava.bio.seq.db	Collections of biological sequence data.

Uses of SequenceDBInstallation in org.biojava.bio.program.ssbind

Fields in org.biojava.bio.program.ssbind declared as SequenceDBInstallation

Modifier and Type	Field and Description
protected SequenceDBInstallation	ViewSequenceFactory.subjectDBs

Methods in org.biojava.bio.program.ssbind that return SequenceDBInstallation

Modifier and Type	Method and Description
SequenceDBInstallation	ViewSequenceFactory.getSubjectDBInstallation() getSubjectDBInstallation returns the installation in which all the databases searched may be found.

Methods in org.biojava.bio.program.ssbind with parameters of type SequenceDBInstallation

Modifier and Type	Method and Description
void	BlastLikeSearchBuilder.setSubjectDBInstallation(SequenceDBInstallation subjectDBs) setSubjectDBInstallation sets the subject database holder to a specific installation.
void	ViewSequenceFactory.setSubjectDBInstallation(SequenceDBInstallation subjectDBs) setSubjectDBInstallation sets the subject database holder to a specific installation.

Constructors in org.biojava.bio.program.ssbind with parameters of type SequenceDBInstallation

Constructor and Description
BlastLikeSearchBuilder(List target, SequenceDB querySeqHolder, SequenceDBInstallation subjectDBs) Creates a new BlastLikeSearchBuilder which will instantiate results into the List target.

Uses of SequenceDBInstallation in org.biojava.bio.seq.db

Classes in org.biojava.bio.seq.db that implement SequenceDBInstallation

Modifier and Type	Class and Description
class	DummySequenceDBInstallation DummySequenceDBInstallation is an implementation which returns the same DummySequenceDB instance regardless of the identifier used to retrieve a database.
class	SimpleSequenceDBInstallation This class is an implementation of interface SequenceDBInstallation that manages a set of SequenceDB objects.