org.biojava.bio.seq.io.agave

Class AGAVEAltIdsPropHandler

java.lang.Object

org.biojava.bio.seq.io.agave.StAXContentHandlerBase

org.biojava.bio.seq.io.agave.StAXPropertyHandler

org.biojava.bio.seq.io.agave.AGAVEAltIdsPropHandler

All Implemented Interfaces:

AGAVEDbIdCallbackItf, StAXContentHandler

public class AGAVEAltIdsPropHandler
extends StAXPropertyHandler
implements AGAVEDbIdCallbackItf

Deals with alternate sequence IDs

Author:

Hanning Ni Doubletwist Inc

Field Summary

Fields

Modifier and Type	Field and Description
static StAXHandlerFactory	AGAVE_ALT_IDS_PROP_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

featureListener, staxenv

Method Summary

Modifier and Type	Method and Description
void	addDbId(AGAVEDbId db_id)

Methods inherited from class org.biojava.bio.seq.io.agave.StAXPropertyHandler

addHandler, endElement, endElementHandler, getHandlerStackIterator, setHandlerCharacteristics, setProperty, startElement, startElementHandler

Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

AGAVE_ALT_IDS_PROP_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_ALT_IDS_PROP_HANDLER_FACTORY

Method Detail

addDbId

public void addDbId(AGAVEDbId db_id)

Specified by:

addDbId in interface AGAVEDbIdCallbackItf