org.biojava.bio.seq.io.agave

Interface AGAVEBioSeqCallbackItf

All Known Implementing Classes:

AGAVEBioSeqHandler

public interface AGAVEBioSeqCallbackItf

An interface that can be tested for by nested handlers when trying to do a callback. This one handles callbacks from nested elements that determine strandedness of a nesting element.

Author:

Hanning Ni Doubletwist Inc

Method Summary

Modifier and Type	Method and Description
void	reportDna(String dna)
void	reportFeature(Location loc) Allows nesting class that manages a gene template to gain information about its extent from nested elements.
void	reportStrand(StrandedFeature.Strand strand)

Method Detail

reportFeature

void reportFeature(Location loc)

Allows nesting class that manages a gene template to gain information about its extent from nested elements. Strand is reported separately as some gene features may not have strand.

reportStrand

void reportStrand(StrandedFeature.Strand strand)

reportDna

void reportDna(String dna)