| Package | Description | 
|---|---|
| org.biojava.ontology | 
 
A general-purpose API for ontologies. 
 | 
| org.biojavax.ontology | 
 Extensions to the biojava ontology model that represent BioSQL ontology. 
 | 
| Modifier and Type | Class and Description | 
|---|---|
static class  | 
Triple.Impl
Basic in-memory implementation of a Triple in an ontology
 This can be used to implement Ontology.createTriple 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Triple | 
Ontology.createTriple(Term subject,
            Term object,
            Term predicate,
            String name,
            String description)
Creates a new Triple. 
 | 
Triple | 
Ontology.Impl.createTriple(Term subject,
            Term object,
            Term predicate,
            String name,
            String description)  | 
Triple | 
IntegerOntology.createTriple(Term subject,
            Term object,
            Term predicate,
            String name,
            String description)  | 
| Modifier and Type | Method and Description | 
|---|---|
Set<Triple> | 
Ontology.getTriples(Term subject,
          Term object,
          Term predicate)
Return all triples from this ontology which match the supplied
 pattern. 
 | 
Set<Triple> | 
Ontology.Impl.getTriples(Term subject,
          Term object,
          Term predicate)  | 
| Modifier and Type | Interface and Description | 
|---|---|
interface  | 
ComparableTriple
Comparable triples, obviously. 
 | 
| Modifier and Type | Class and Description | 
|---|---|
class  | 
SimpleComparableTriple
Basic comparable triple, BioSQL style. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Triple | 
SimpleComparableOntology.createTriple(Term subject,
            Term object,
            Term predicate,
            String name,
            String description)
Creates a new Triple. 
 | 
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