Uses of Package
org.biojavax.bio.alignment

Packages that use org.biojavax.bio.alignment

Package	Description
org.biojavax.bio.alignment	This package contains the interfaces that need to be implemented by discrete alignment services.
org.biojavax.bio.alignment.blast	This package holds implementations of the org.biojava3.ws.alignment interfaces for the NCBI remote QBlast services through the WWW.

Classes in org.biojavax.bio.alignment used by org.biojavax.bio.alignment

Class and Description
RemotePairwiseAlignmentOutputProperties RemotePairwiseAlignmentOutputProperties: the simplest representation of an object capable of holding output formatting informations to be fed to a RemotePairwiseAlignmentService-implemented object.
RemotePairwiseAlignmentProperties RemotePairwiseAlignmentProperties is a interface that contains the barest of methods for setting and getting Alignment properties.

Classes in org.biojavax.bio.alignment used by org.biojavax.bio.alignment.blast

Class and Description
RemotePairwiseAlignmentOutputProperties RemotePairwiseAlignmentOutputProperties: the simplest representation of an object capable of holding output formatting informations to be fed to a RemotePairwiseAlignmentService-implemented object.
RemotePairwiseAlignmentProperties RemotePairwiseAlignmentProperties is a interface that contains the barest of methods for setting and getting Alignment properties.
RemotePairwiseAlignmentService This interface specifies minimal information needed to execute a pairwise alignment on a remote service.