Uses of Package
org.biojavax.bio.seq.io

Packages that use org.biojavax.bio.seq.io

Package	Description
org.biojavax.bio.db.ncbi	Interfaces to NCBI data.
org.biojavax.bio.seq	Rich implementations of Sequences, Locations and Features.
org.biojavax.bio.seq.io	Classes to support the I/O of RichSequence and Bioentry objects.

Classes in org.biojavax.bio.seq.io used by org.biojavax.bio.db.ncbi

Class and Description
RichSequenceBuilderFactory Simple factory for constructing new RichSequenceBuilder objects.

Classes in org.biojavax.bio.seq.io used by org.biojavax.bio.seq

Class and Description
FastaHeader This class is used by FastaFormat to determine which fields are in the fasta header.
RichSequenceBuilderFactory Simple factory for constructing new RichSequenceBuilder objects.

Classes in org.biojavax.bio.seq.io used by org.biojavax.bio.seq.io

Class and Description
FastaHeader This class is used by FastaFormat to determine which fields are in the fasta header.
RichSeqIOAdapter This class implements all methods of RichSeqIOListener and takes no action.
RichSeqIOListener An interface for classes that listen to BioEntry or RichSequence I/O streams.
RichSequenceBuilder An interface for objects that can build RichSequences.
RichSequenceBuilderFactory Simple factory for constructing new RichSequenceBuilder objects.
RichSequenceFormat Allows a file format to be read/written as RichSequences.
RichSequenceFormat.BasicFormat Provides a basic format with simple things like line-widths precoded.
RichSequenceFormat.HeaderlessFormat Provides the basic implementation required for simple header/footer-less files such as Genbank.