Uses of Interface
org.biojavax.RichAnnotatable

Packages that use RichAnnotatable

Package	Description
org.biojavax	The Biojava extensions packages, classes that extend the core biojava functionality The biojavax packages contain a number of extensions to the core biojava interfaces.
org.biojavax.bio	Classes to represent biological entities and their relationships.
org.biojavax.bio.seq	Rich implementations of Sequences, Locations and Features.

Uses of RichAnnotatable in org.biojavax

Subinterfaces of RichAnnotatable in org.biojavax

Modifier and Type	Interface and Description
interface	CrossRef Represents a cross reference to another database.

Classes in org.biojavax that implement RichAnnotatable

Modifier and Type	Class and Description
class	SimpleCrossRef A basic CrossRef implementation.

Uses of RichAnnotatable in org.biojavax.bio

Subinterfaces of RichAnnotatable in org.biojavax.bio

Modifier and Type	Interface and Description
interface	BioEntry This class relates to the bioentry table in BioSQL.

Classes in org.biojavax.bio that implement RichAnnotatable

Modifier and Type	Class and Description
class	SimpleBioEntry Reference implementation of a BioEntry object which has no features or sequence.

Uses of RichAnnotatable in org.biojavax.bio.seq

Subinterfaces of RichAnnotatable in org.biojavax.bio.seq

Modifier and Type	Interface and Description
interface	RichFeature Represents a feature that can be given name and rank and be moved from one sequence to another.
interface	RichLocation Describes locations, and adds the concepts of circularity, fuzziness, annotations, and cross-references to other databases.
interface	RichSequence A rich sequence is a combination of a org.biojavax.bio.Bioentry and a Sequence.

Classes in org.biojavax.bio.seq that implement RichAnnotatable

Modifier and Type	Class and Description
class	CompoundRichLocation An implementation of RichLocation which covers multiple locations, but on the same strand of the same (optionally circular) sequence.
class	EmptyRichLocation An Empty implementation of RichLocation.
class	MultiSourceCompoundRichLocation An implementation of RichLocation which possibly covers multiple locations, on different strands, different circular lengths, or different sequences.
class	SimpleRichFeature A simple implementation of RichFeature.
class	SimpleRichLocation A simple implementation of RichLocation.
class	SimpleRichSequence A simple implementation of RichSequence.
class	ThinRichSequence A simple implementation of RichSequence.