|Modifier and Type||Field and Description|
Factory which used DistributionFactory.DEFAULT to create conditioned distributions.
|Constructor and Description|
Construct a new OrderNDistributionFactory with a specified factory for conditioned distributions.
|Modifier and Type||Method and Description|
Creates an OrderNDistribution of the appropriate type.
public Distribution createDistribution(Alphabet alpha) throws IllegalAlphabetException
alpha- the Alphabet should be in a form that clearly indicates the conditioning and the conditioned alphabet unless it is very obvious. For example (DNA x DNA) is obvious, ((DNA x DNA x DNA) x DNA) indicates that (DNA x DNA x DNA) is the conditioning
Alphabetand DNA is the conditioned
Alphabet. (DNA x DNA x DNA x DNA) doesn't but for compatibility with biojava 1.2 this is allowed in the constructor. As from biojava 1.2.3 or greater this will be internally converted to ((DNA x DNA x DNA) x DNA) which was the convention implied by biojava 1.2 Calls to the returned
getAlphabet()method will return the converted
IllegalAlphabetException- if a Distribution cannot be made with that
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