org.biojava.bio.dist

Class UntrainableDistribution

java.lang.Object

org.biojava.utils.AbstractChangeable

org.biojava.bio.dist.AbstractDistribution

org.biojava.bio.dist.SimpleDistribution

org.biojava.bio.dist.UntrainableDistribution

All Implemented Interfaces:

Serializable, Distribution, Changeable

public class UntrainableDistribution
extends SimpleDistribution

A distribution which does not interact with the training framework. This class behaves in exactly the same manner as SimpleDistribution, except that it has a no-op registerWithTrainer method. It is useful for building Markov models where you wish to train only a subset of the Distributions.

Since:

1.3

Author:

Thomas Down

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.biojava.bio.dist.SimpleDistribution

SimpleDistribution.Trainer

Nested classes/interfaces inherited from interface org.biojava.bio.dist.Distribution

Distribution.NullModelForwarder

Field Summary

Fields inherited from class org.biojava.bio.dist.AbstractDistribution

nullModelForwarder

Fields inherited from interface org.biojava.bio.dist.Distribution

NULL_MODEL, WEIGHTS

Constructor Summary

Constructors

Constructor and Description
UntrainableDistribution(FiniteAlphabet alpha) Construct a new untrainable distribution over the specified alphabet.

Method Summary

Modifier and Type	Method and Description
void	registerWithTrainer(DistributionTrainerContext dtc) Register an SimpleDistribution.Trainer instance as the trainer for this distribution.

Methods inherited from class org.biojava.bio.dist.SimpleDistribution

getAlphabet, getNullModel, getWeightImpl, getWeights, hasWeights, setNullModelImpl, setWeightImpl

Methods inherited from class org.biojava.bio.dist.AbstractDistribution

equals, getChangeSupport, getWeight, hashCode, sampleSymbol, setNullModel, setWeight

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, generateChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Constructor Detail

UntrainableDistribution

public UntrainableDistribution(FiniteAlphabet alpha)

Construct a new untrainable distribution over the specified alphabet.

Parameters:

alpha - the finite alphabet to be over

Method Detail

registerWithTrainer

public void registerWithTrainer(DistributionTrainerContext dtc)

Description copied from class: SimpleDistribution

Register an SimpleDistribution.Trainer instance as the trainer for this distribution.

Specified by:

registerWithTrainer in interface Distribution

Overrides:

registerWithTrainer in class SimpleDistribution

Parameters:

dtc - the context to register with