Uses of Interface
org.biojava.bio.dist.OrderNDistribution

Packages that use OrderNDistribution

Package	Description
org.biojava.bio.dist	Probability distributions over Alphabets.
org.biojavax.ga.functions	GA functions A genetic algorithm requires a number of functions.
org.biojavax.ga.util	Utility functions and helper classes

Uses of OrderNDistribution in org.biojava.bio.dist

Classes in org.biojava.bio.dist that implement OrderNDistribution

Modifier and Type	Class and Description
class	AbstractOrderNDistribution Simple base class for OrderNDistributions.

Methods in org.biojava.bio.dist with parameters of type OrderNDistribution

Modifier and Type	Method and Description
protected static Sequence	DistributionTools.generateOrderNSequence(String name, OrderNDistribution d, int length) Deprecated. use generateSequence() or generateSymbolList() instead.

Uses of OrderNDistribution in org.biojavax.ga.functions

Methods in org.biojavax.ga.functions that return OrderNDistribution

Modifier and Type	Method and Description
OrderNDistribution	MutationFunction.getMutationSpectrum()
OrderNDistribution	MutationFunction.NoMutation.getMutationSpectrum()
OrderNDistribution	AbstractMutationFunction.getMutationSpectrum()

Methods in org.biojavax.ga.functions with parameters of type OrderNDistribution

Modifier and Type	Method and Description
void	MutationFunction.setMutationSpectrum(OrderNDistribution mutationSpectrum) Sets the Distribution of Symbols that will be selected from when a mutation occurs.
void	MutationFunction.NoMutation.setMutationSpectrum(OrderNDistribution odn)
void	AbstractMutationFunction.setMutationSpectrum(OrderNDistribution mutationSpectrum)

Uses of OrderNDistribution in org.biojavax.ga.util

Methods in org.biojavax.ga.util that return OrderNDistribution

Modifier and Type	Method and Description
static OrderNDistribution	GATools.standardMutationDistribution(FiniteAlphabet a) Makes a mutation Distribution where the probability of a Symbol being mutated to itself is zero and the probability of it being changed to any other Symbol in the Alphabet a is 1.0 / (a.size() - 1.0)
static OrderNDistribution	GATools.uniformMutationDistribution(FiniteAlphabet a) Makes a 1st order distribution which is infact uniform (equivalent to a uniform zero order distribution).