org.biojava.bio.dp

Class SimpleModelTrainer

java.lang.Object

org.biojava.bio.dist.SimpleDistributionTrainerContext

org.biojava.bio.dp.SimpleModelTrainer

All Implemented Interfaces:

Serializable, DistributionTrainerContext, ModelTrainer

public class SimpleModelTrainer
extends SimpleDistributionTrainerContext
implements ModelTrainer, Serializable

Author:

Matthew Pocock, Thomas Down

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
SimpleModelTrainer()

Method Summary

Modifier and Type	Method and Description
void	registerModel(MarkovModel model) Registers an HMM with this trainer.

Methods inherited from class org.biojava.bio.dist.SimpleDistributionTrainerContext

addCount, clearCounts, getCount, getNullModelWeight, getTrainer, registerDistribution, registerTrainer, setNullModelWeight, train

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.bio.dist.DistributionTrainerContext

addCount, clearCounts, getCount, getNullModelWeight, getTrainer, registerDistribution, registerTrainer, setNullModelWeight, train

Constructor Detail

SimpleModelTrainer

public SimpleModelTrainer()

Method Detail

registerModel

public void registerModel(MarkovModel model)

Description copied from interface: ModelTrainer

Registers an HMM with this trainer.

If the model has been already registered, then this method should do nothing. If it has not been registered, then this method should loop over every state in the model and register the Distribution returned by getWeight.

Specified by:

registerModel in interface ModelTrainer

Parameters:

model - the MarkovModel to train