org.biojava.bio.gui.sequence

Class RectangularImapRenderer

java.lang.Object

org.biojava.bio.gui.sequence.RectangularImapRenderer

All Implemented Interfaces:

Serializable, BeadFeatureRenderer, FeatureRenderer, ImageMapRenderer

public class RectangularImapRenderer
extends Object
implements BeadFeatureRenderer, ImageMapRenderer, Serializable

RectangularImapRenderer is a decorator for RectangularBeadRenderer which adds the ability to create HTML image map coordinates which correspond to the feature rendering produced by the RectangularBeadRenderer.

Since:

1.3

Author:

Keith James

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
RectangularImapRenderer(RectangularBeadRenderer renderer, ImageMap imageMap, URLFactory urlFactory) Creates a new RectangularImapRenderer.

Method Summary

Modifier and Type	Method and Description
double	getBeadDepth() getBeadDepth returns the depth of a single bead produced by the renderer.
double	getBeadDisplacement() getBeadDisplacement returns the displacement of beads from the centre line of the renderer.
double	getDepth(SequenceRenderContext context)
boolean	getHeightScaling() getHeightScaling returns the state of the height scaling policy.
ImageMap	getImageMap() getImageMap returns the current image map.
FeatureHolder	processMouseEvent(FeatureHolder holder, SequenceRenderContext context, MouseEvent mEvent)
void	renderBead(Graphics2D g2, Feature f, SequenceRenderContext context) renderBead should implement rendering for this bead type only.
void	renderFeature(Graphics2D g2, Feature f, SequenceRenderContext context)
void	renderImageMap(Graphics2D g2, Feature f, SequenceRenderContext context) renderImageMap writes a set of image map coordinates corresponding to the rectangle drawn by the renderer.
void	setDelegateRenderer(OptimizableFilter filter, BeadFeatureRenderer renderer) setDelegateRenderer for the specified filter.
void	setHeightScaling(boolean isEnabled) setHeightScaling sets the height scaling policy.
void	setImageMap(ImageMap imageMap) setImageMap sets the current image map.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RectangularImapRenderer

public RectangularImapRenderer(RectangularBeadRenderer renderer,
                               ImageMap imageMap,
                               URLFactory urlFactory)

Creates a new RectangularImapRenderer.

Parameters:

renderer - a RectangularBeadRenderer.

imageMap - an ImageMap.

urlFactory - a URLFactory which should be capable of creating a suitable URL from each Feature on the Sequence to be rendered.

Method Detail

getImageMap

public ImageMap getImageMap()

getImageMap returns the current image map.

Returns:

an ImageMap.

setImageMap

public void setImageMap(ImageMap imageMap)

setImageMap sets the current image map.

Parameters:

imageMap - an ImageMap.

setDelegateRenderer

public void setDelegateRenderer(OptimizableFilter filter,
                                BeadFeatureRenderer renderer)

setDelegateRenderer for the specified filter.

Specified by:

setDelegateRenderer in interface BeadFeatureRenderer

Parameters:

filter - an OptimizableFilter.

renderer - a BeadFeatureRenderer.

renderImageMap

public void renderImageMap(Graphics2D g2,
                           Feature f,
                           SequenceRenderContext context)

renderImageMap writes a set of image map coordinates corresponding to the rectangle drawn by the renderer. The hotspots created by this method have the rendered Feature set as their user object.

This method is called by renderFeature when a raster image is rendered.

Specified by:

renderImageMap in interface ImageMapRenderer

Parameters:

g2 - a Graphics2D.

f - a Feature.

context - a SequenceRenderContext.

renderFeature

public void renderFeature(Graphics2D g2,
                          Feature f,
                          SequenceRenderContext context)

Specified by:

renderFeature in interface FeatureRenderer

renderBead

public void renderBead(Graphics2D g2,
                       Feature f,
                       SequenceRenderContext context)

Description copied from interface: BeadFeatureRenderer

renderBead should implement rendering for this bead type only. The renderFeature method is expected to handle the calls to delegate renderers.

Specified by:

renderBead in interface BeadFeatureRenderer

Parameters:

g2 - a Graphics2D.

f - a Feature to render.

context - a SequenceRenderContext context.

getDepth

public double getDepth(SequenceRenderContext context)

Specified by:

getDepth in interface FeatureRenderer

getBeadDepth

public double getBeadDepth()

Description copied from interface: BeadFeatureRenderer

getBeadDepth returns the depth of a single bead produced by the renderer.

Specified by:

getBeadDepth in interface BeadFeatureRenderer

Returns:

a double.

getBeadDisplacement

public double getBeadDisplacement()

Description copied from interface: BeadFeatureRenderer

getBeadDisplacement returns the displacement of beads from the centre line of the renderer. A positive value indicates displacment downwards (for horizontal renderers) or to the right (for vertical renderers).

Specified by:

getBeadDisplacement in interface BeadFeatureRenderer

Returns:

a double.

getHeightScaling

public boolean getHeightScaling()

getHeightScaling returns the state of the height scaling policy.

Returns:

a boolean true if height scaling is enabled.

setHeightScaling

public void setHeightScaling(boolean isEnabled)
                      throws ChangeVetoException

setHeightScaling sets the height scaling policy. Default behaviour is for this to be enabled leading to features being drawn with a height equal to half their width, subject to a maximum height restriction equal to the beadDepth set in the constructor. If disabled, features will always be drawn at the maximum height allowed by the beadDepth parameter.

Parameters:

isEnabled - a boolean.

Throws:

ChangeVetoException - if an error occurs.

processMouseEvent

public FeatureHolder processMouseEvent(FeatureHolder holder,
                                       SequenceRenderContext context,
                                       MouseEvent mEvent)

Specified by:

processMouseEvent in interface FeatureRenderer