org.biojava.bio.program.phred

Interface Qualitative

All Known Implementing Classes:

PhredSequence

public interface Qualitative

Qualitative is an interface for classes wanting to hold quality data in symbolic form such as Phred scores.

Copyright (c) 2001

Company: AgResearch

Since:

1.1

Author:

Mark Schreiber

Method Summary

Modifier and Type	Method and Description
SymbolList	getQuality() Retreives the list of quality symbols from the underlying object.
Symbol	getQualityAt(int index) Retreives the quality symbol for the specified index.

Method Detail

getQuality

SymbolList getQuality()

Retreives the list of quality symbols from the underlying object.

getQualityAt

Symbol getQualityAt(int index)
             throws IndexOutOfBoundsException

Retreives the quality symbol for the specified index.

Parameters:

index - - Must be greater than zero.

Throws:

IndexOutOfBoundsException - if index is outside of the quality symbol list.