|Modifier and Type||Method and Description|
Build a new DataStore.
Get a pre-built data store associated with a file.
DataStore getDataStore(File storeFile) throws IOException
storeFile- the File to map in as a data store
IOException- if the file could not be mapped
DataStore buildDataStore(File storeFile, SequenceDB seqDB, Packing packing, int wordLength, int threshold) throws IllegalAlphabetException, IOException, BioException
storeFile- the file to store the data store
seqDB- the SequenceDB to store in the data store
packing- the Packing used to bit-encode the sequences
wordLength- the number of symbols per word
threshold- the number of times a word must appear to be ignored
IllegalAlphabetException- if the packing does not agree with the sequences
BioException- if there is a problem building the data store
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