org.biojava.bio.program.ssbind

Class AlignmentStAXHandler

java.lang.Object

org.biojava.utils.stax.StAXContentHandlerBase

org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

org.biojava.bio.program.ssbind.AlignmentStAXHandler

All Implemented Interfaces:

StAXContentHandler

public class AlignmentStAXHandler
extends SeqSimilarityStAXHandler

AlignmentStAXHandler handles the BlastLikeAlignment element of BioJava BlastLike XML.

Since:

1.3

Author:

Keith James

Field Summary

Fields

Modifier and Type	Field and Description
static StAXHandlerFactory	ALIGNMENT_HANDLER_FACTORY

Fields inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

ssContext

Method Summary

Methods inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

addHandler, endElement, handleEndElement, handleStartElement, startElement

Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase

characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ALIGNMENT_HANDLER_FACTORY

public static final StAXHandlerFactory ALIGNMENT_HANDLER_FACTORY