Uses of Interface
org.biojava.bio.seq.SequenceAnnotator

Packages that use SequenceAnnotator

Package	Description
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.
org.biojava.bio.molbio	The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR.
org.biojava.bio.program.gff	GFF manipulation.
org.biojava.bio.seq.db	Collections of biological sequence data.

Uses of SequenceAnnotator in org.biojava.bio.dp

Classes in org.biojava.bio.dp that implement SequenceAnnotator

Modifier and Type	Class and Description
class	WeightMatrixAnnotator Annotates a sequence with hits to a weight-matrix.

Uses of SequenceAnnotator in org.biojava.bio.molbio

Classes in org.biojava.bio.molbio that implement SequenceAnnotator

Modifier and Type	Class and Description
class	RestrictionMapper RestrictionMapper is a class for annotating Sequences with Features which represent restriction sites.

Uses of SequenceAnnotator in org.biojava.bio.program.gff

Methods in org.biojava.bio.program.gff that return SequenceAnnotator

Modifier and Type	Method and Description
SequenceAnnotator	GFFEntrySet.getAnnotator() Get an annotator that can add GFF features to a Sequence using the features in this GFFEntrySet.
SequenceAnnotator	GFFEntrySet.getAnnotator(boolean checkSeqName) Get an annotator that can add GFF features to a Sequence using the features in this GFFEntrySet.

Uses of SequenceAnnotator in org.biojava.bio.seq.db

Constructors in org.biojava.bio.seq.db with parameters of type SequenceAnnotator

Constructor and Description
AnnotatedSequenceDB(SequenceDB parent, SequenceAnnotator a)