public interface SeqIOListener
RichSeqIOListener
.RichSeqIOListener
Modifier and Type | Method and Description |
---|---|
void |
addFeatureProperty(Object key,
Object value)
Notify the listener of a feature property.
|
void |
addSequenceProperty(Object key,
Object value)
Notify the listener of a sequence-wide property.
|
void |
addSymbols(Alphabet alpha,
Symbol[] syms,
int start,
int length)
Notify the listener of symbol data.
|
void |
endFeature()
Mark the end of data associated with one specific feature.
|
void |
endSequence()
Notify the listener that processing of the sequence is complete.
|
void |
setName(String name)
Notify the listener that the current sequence is generally known
by a particular name.
|
void |
setURI(String uri)
Notify the listener of a URI identifying the current sequence.
|
void |
startFeature(Feature.Template templ)
Notify the listener that a new feature object is starting.
|
void |
startSequence()
Start the processing of a sequence.
|
void startSequence() throws ParseException
ParseException
void endSequence() throws ParseException
ParseException
void setName(String name) throws ParseException
name
- the String that should be returned by getName for the sequence
being parsedParseException
void setURI(String uri) throws ParseException
ParseException
void addSymbols(Alphabet alpha, Symbol[] syms, int start, int length) throws IllegalAlphabetException
alpha
- The alphabet of the symbol datasyms
- An array containing symbolsstart
- The start offset of valid data within the arraylength
- The number of valid symbols in the arrayIllegalAlphabetException
- if we can't cope with this
alphabet.void addSequenceProperty(Object key, Object value) throws ParseException
ParseException
void startFeature(Feature.Template templ) throws ParseException
ParseException
void endFeature() throws ParseException
ParseException
void addFeatureProperty(Object key, Object value) throws ParseException
ParseException
Copyright © 2020 BioJava. All rights reserved.