public class SimpleAnnotFilter extends Object implements AGAVEAnnotFilter
Modifier and Type | Field and Description |
---|---|
static AGAVEAnnotFilterFactory |
SIMPLE_ANNOT_FILTER_FACTORY |
BOTH_FORWARD_COMPLEMENT, COMPLEMENT, FORWARD
public static final AGAVEAnnotFilterFactory SIMPLE_ANNOT_FILTER_FACTORY
public String getAccession(Annotation annot)
getAccession
in interface AGAVEAnnotFilter
public String getKeyword(Annotation annot)
getKeyword
in interface AGAVEAnnotFilter
public String getElementId(Annotation annot)
getElementId
in interface AGAVEAnnotFilter
public String getOrganism(Annotation annot)
getOrganism
in interface AGAVEAnnotFilter
public String getLabel(Annotation annot)
getLabel
in interface AGAVEAnnotFilter
public String getDescription(Annotation annot)
getDescription
in interface AGAVEAnnotFilter
public String getMatchAlign(Annotation annot)
getMatchAlign
in interface AGAVEAnnotFilter
public AGAVEMatchRegion getMatchRegion(Annotation annot)
getMatchRegion
in interface AGAVEAnnotFilter
public AGAVEQueryRegion getQueryRegion(Annotation annot)
getQueryRegion
in interface AGAVEAnnotFilter
public String getClassifySystem(Annotation annot)
getClassifySystem
in interface AGAVEAnnotFilter
public String getClassifyId(Annotation annot)
getClassifyId
in interface AGAVEAnnotFilter
public String getClassifyType(Annotation annot)
getClassifyType
in interface AGAVEAnnotFilter
public String[] getExonIds(Annotation annot)
getExonIds
in interface AGAVEAnnotFilter
public String getChromNum(Annotation annot)
getChromNum
in interface AGAVEAnnotFilter
public AGAVEIdAlias[] getIdAlias(Annotation annot)
getIdAlias
in interface AGAVEAnnotFilter
public String getNote(Annotation annot)
getNote
in interface AGAVEAnnotFilter
public AGAVEDbId[] getAltIds(Annotation annot)
getAltIds
in interface AGAVEAnnotFilter
public AGAVEMapLocation[] getMapLocation(Annotation annot)
getMapLocation
in interface AGAVEAnnotFilter
public AGAVERelatedAnnot[] getRelatedAnnot(Annotation annot)
getRelatedAnnot
in interface AGAVEAnnotFilter
public String[] getElementIds(Annotation annot)
getElementIds
in interface AGAVEAnnotFilter
public String getGroupOrder(Annotation annot)
getGroupOrder
in interface AGAVEAnnotFilter
public String getMatchDesc(Annotation annot)
getMatchDesc
in interface AGAVEAnnotFilter
public String getFeatureType(Annotation annot)
getFeatureType
in interface AGAVEAnnotFilter
public String getResultType(Annotation annot)
getResultType
in interface AGAVEAnnotFilter
public String getConfidence(Annotation annot)
getConfidence
in interface AGAVEAnnotFilter
public String getAlignLength(Annotation annot)
getAlignLength
in interface AGAVEAnnotFilter
public String getAlignUnits(Annotation annot)
getAlignUnits
in interface AGAVEAnnotFilter
public AGAVEXrefs[] getXrefs(Annotation annot)
getXrefs
in interface AGAVEAnnotFilter
public String getVersion(Annotation annot)
getVersion
in interface AGAVEAnnotFilter
public String getSequenceId(Annotation annot)
getSequenceId
in interface AGAVEAnnotFilter
public String getTaxonId(Annotation annot)
getTaxonId
in interface AGAVEAnnotFilter
public String getCloneId(Annotation annot)
getCloneId
in interface AGAVEAnnotFilter
public String getCloneLibrary(Annotation annot)
getCloneLibrary
in interface AGAVEAnnotFilter
public String getChromosome(Annotation annot)
getChromosome
in interface AGAVEAnnotFilter
public String getMapPosition(Annotation annot)
getMapPosition
in interface AGAVEAnnotFilter
public String getEcNumber(Annotation annot)
getEcNumber
in interface AGAVEAnnotFilter
public String getCreateDate(Annotation annot)
getCreateDate
in interface AGAVEAnnotFilter
public String getUpdateDate(Annotation annot)
getUpdateDate
in interface AGAVEAnnotFilter
public String getOS(Annotation annot)
getOS
in interface AGAVEAnnotFilter
public String getMolType(Annotation annot)
getMolType
in interface AGAVEAnnotFilter
public AGAVEDbId getDbId(Annotation annot)
getDbId
in interface AGAVEAnnotFilter
public AGAVEProperty[] getProperty(Annotation annot, String type)
getProperty
in interface AGAVEAnnotFilter
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