org.biojavax.bio.phylo

Class DistanceBasedTreeMethod

java.lang.Object

org.biojavax.bio.phylo.DistanceBasedTreeMethod

public class DistanceBasedTreeMethod
extends Object

Constructor Summary

Constructors

Constructor and Description
DistanceBasedTreeMethod()

Method Summary

Modifier and Type	Method and Description
static org.jgrapht.WeightedGraph<String,org.jgrapht.graph.DefaultWeightedEdge>	NeighborJoining(TaxaBlock t, CharactersBlock ch)
static org.jgrapht.WeightedGraph<String,org.jgrapht.graph.DefaultWeightedEdge>	Upgma(TaxaBlock t, CharactersBlock ch)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DistanceBasedTreeMethod

public DistanceBasedTreeMethod()

Method Detail

Upgma

public static org.jgrapht.WeightedGraph<String,org.jgrapht.graph.DefaultWeightedEdge> Upgma(TaxaBlock t,
                                                                                            CharactersBlock ch)

NeighborJoining

public static org.jgrapht.WeightedGraph<String,org.jgrapht.graph.DefaultWeightedEdge> NeighborJoining(TaxaBlock t,
                                                                                                      CharactersBlock ch)