Uses of Package
org.biojavax.bio.phylo.io.nexus

Packages that use org.biojavax.bio.phylo.io.nexus

Package	Description
org.biojavax.bio.phylo	Classes to support phlylogeny objects.
org.biojavax.bio.phylo.io.nexus	Classes to support the I/O of Nexus files.

Classes in org.biojavax.bio.phylo.io.nexus used by org.biojavax.bio.phylo

Class and Description
CharactersBlock Represents Nexus characters blocks.
TaxaBlock Represents Nexus taxa blocks.

Classes in org.biojavax.bio.phylo.io.nexus used by org.biojavax.bio.phylo.io.nexus

Class and Description
CharactersBlock Represents Nexus characters blocks.
CharactersBlockBuilder Builds Nexus characters blocks.
CharactersBlockListener Listens to events that represent Nexus characters blocks.
CharactersBlockParser Parses Nexus characters blocks.
DataBlockListener Listens to events that represent Nexus data blocks.
DistancesBlockListener Listens to events that represent Nexus distances blocks.
NexusBlock Represents a Nexus block.
NexusBlock.Abstract
NexusBlockBuilder Builds a Nexus block from listening to events.
NexusBlockBuilder.Abstract This abstract version knows how to build and add comments.
NexusBlockListener Listens to events from NexusBlockParser objects to create objects.
NexusBlockParser Parses Nexus blocks.
NexusBlockParser.Abstract All block parsers should derive from this abstract parser.
NexusComment Represents a Nexus comment, possibly nested.
NexusFile Represents Nexus files.
NexusFileListener Listens to events fired by the Nexus parser.
NexusFileListener.Abstract Example abstract implementation which all others should extend.
NexusObject Represents general info about nexus objects.
TaxaBlockListener Listens to events that represent Nexus taxa blocks.
TreesBlock.NewickTreeString A simple representation of a Newick tree as a single string.
TreesBlockListener Listens to events that represent Nexus trees blocks.