Package org.biojava.bio.alignment

Class SimpleAlignmentElement

java.lang.Object

org.biojava.bio.alignment.SimpleAlignmentElement

All Implemented Interfaces:

AlignmentElement

public class SimpleAlignmentElement
extends Object
implements AlignmentElement

SimpleSimpleAlignment is a simple implementation of AlignmentElement.

Author:

David Waring

Field Summary

Fields

Modifier and Type	Field	Description
protected String	label
protected Location	loc
protected SymbolList	seq

Constructor Summary

Constructors

Constructor	Description
SimpleAlignmentElement(String label, SymbolList seq, Location loc)

Method Summary

Modifier and Type	Method	Description
String	getLabel()
Location	getLoc()
SymbolList	getSymbolList()
void	setLoc(Location nLoc)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

label

protected String label

loc

protected Location loc

seq

protected SymbolList seq

Constructor Detail

SimpleAlignmentElement

public SimpleAlignmentElement(String label,
                              SymbolList seq,
                              Location loc)
                       throws BioException

Throws:

BioException

Method Detail

getLabel

public String getLabel()

Specified by:

getLabel in interface AlignmentElement

getLoc

public Location getLoc()

Specified by:

getLoc in interface AlignmentElement

getSymbolList

public SymbolList getSymbolList()

Specified by:

getSymbolList in interface AlignmentElement

setLoc

public void setLoc(Location nLoc)
            throws BioError

Specified by:

setLoc in interface AlignmentElement

Throws:

BioError