Uses of Interface
org.biojava.bio.dist.DistributionTrainerContext

Packages that use DistributionTrainerContext

Package	Description
org.biojava.bio.dist	Probability distributions over Alphabets.
org.biojava.bio.dp	HMM and Dynamic Programming Algorithms.

Uses of DistributionTrainerContext in org.biojava.bio.dist

Classes in org.biojava.bio.dist that implement DistributionTrainerContext

Modifier and Type	Class	Description
class	SimpleDistributionTrainerContext	A no-frills implementation of DistributionTrainerContext.

Methods in org.biojava.bio.dist with parameters of type DistributionTrainerContext

Modifier and Type	Method	Description
void	DistributionTrainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double times)	Registers that sym was counted in this state.
void	IgnoreCountsTrainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double times)
void	SimpleDistribution.Trainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double times)
void	SimpleDistributionTrainer.addCount(DistributionTrainerContext dtc, AtomicSymbol sym, double count)	Deprecated.
void	DistributionTrainer.clearCounts(DistributionTrainerContext dtc)	Clears all of the counts to zero.
void	IgnoreCountsTrainer.clearCounts(DistributionTrainerContext dtc)
void	SimpleDistribution.Trainer.clearCounts(DistributionTrainerContext dtc)
void	SimpleDistributionTrainer.clearCounts(DistributionTrainerContext dtc)	Deprecated.
double	DistributionTrainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym)	Get the current count for this state.
double	IgnoreCountsTrainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym)
double	SimpleDistribution.Trainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym)
double	SimpleDistributionTrainer.getCount(DistributionTrainerContext dtc, AtomicSymbol sym)	Deprecated.
void	AbstractDistribution.registerWithTrainer(DistributionTrainerContext dtc)	Register an IgnoreCountsTrainer instance as the trainer for this distribution.
void	AbstractOrderNDistribution.registerWithTrainer(DistributionTrainerContext dtc)
void	Distribution.registerWithTrainer(DistributionTrainerContext dtc)	Register this distribution with a training context.
void	GapDistribution.registerWithTrainer(DistributionTrainerContext dtc)
void	PairDistribution.registerWithTrainer(DistributionTrainerContext dtc)
void	SimpleDistribution.registerWithTrainer(DistributionTrainerContext dtc)	Register an SimpleDistribution.Trainer instance as the trainer for this distribution.
void	TranslatedDistribution.registerWithTrainer(DistributionTrainerContext dtc)
void	UniformDistribution.registerWithTrainer(DistributionTrainerContext dtc)
void	UntrainableDistribution.registerWithTrainer(DistributionTrainerContext dtc)
void	DistributionTrainer.train(DistributionTrainerContext dtc, double weight)	Trains the Distribution, given a null model.
void	IgnoreCountsTrainer.train(DistributionTrainerContext dtc, double weight)
void	SimpleDistribution.Trainer.train(DistributionTrainerContext dtc, double weight)
void	SimpleDistributionTrainer.train(DistributionTrainerContext dtc, double weight)	Deprecated.
protected void	SimpleDistribution.Trainer.trainImpl(DistributionTrainerContext dtc, double weight)

Uses of DistributionTrainerContext in org.biojava.bio.dp

Subinterfaces of DistributionTrainerContext in org.biojava.bio.dp

Modifier and Type	Interface	Description
interface	ModelTrainer	Encapsulates the training of an entire model.

Classes in org.biojava.bio.dp that implement DistributionTrainerContext

Modifier and Type	Class	Description
class	SimpleModelTrainer