Package org.biojava.bio.dp

Class ScoreType.Probability

java.lang.Object

org.biojava.bio.dp.ScoreType.Probability

All Implemented Interfaces:

Serializable, ScoreType

Enclosing interface:

ScoreType

public static class ScoreType.Probability
extends Object
implements ScoreType, Serializable

In this class, calculateScore returns the probability of a Symbol being emitted.

Author:

Matthew Pocock

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.dp.ScoreType

ScoreType.NullModel, ScoreType.Odds, ScoreType.Probability

Field Summary

Fields inherited from interface org.biojava.bio.dp.ScoreType

NULL_MODEL, ODDS, PROBABILITY

Constructor Summary

Constructors

Constructor	Description
Probability()

Method Summary

Modifier and Type	Method	Description
double	calculateScore(Distribution dist, Symbol sym)	Calculates the score associated with a distribution and a symbol.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Probability

public Probability()

Method Detail

calculateScore

public double calculateScore(Distribution dist,
                             Symbol sym)
                      throws IllegalSymbolException

Description copied from interface: ScoreType

Calculates the score associated with a distribution and a symbol.

Specified by:

calculateScore in interface ScoreType

Throws:

IllegalSymbolException